README for Figure 2a.zip 
*** This file contains the predicted structure represented in Figure 2a of 
Article: Identification, characterization and classification of Nucleoid-Associated Proteins
Authors: Samuel Schwab, Remus T. Dame
Journal: Molecular Microbiology
Corresponding author: rtdame@chem.leidenuniv.nl

Legend Figure 2a:
The DNA-bridging filament formed by model DNA bridging NAP H-NS from Escherichia coli. The zoom-in shows the homotetramer of H-NS as predicted by AlphaFold2. The DNA, the DNA binding domain, the dimerization domain, and the dimer-dimer domain are colored blue, green, orange, and pink, respectively. The H-NS dimers that make up the filament are colored gray and yellow. Placement of the DNA is based on H-NS-DNA models (Arold et al., 2010; Boudreau et al., 2018; Qin et al., 2019; van der Valk, Vreede, et al., 2017).

 *** The data were obtained by generating multiple sequence alignments with MMseqs2, which were subsequently used as inputs for LocalColabFold to predict the protein structures with AlphaFold2 and AlphaFold2-Multimer. The multiple sequence alignments, the predicted aligned errors, the predicted local distance difference tests, and the structure files in PDB format are provided.